Top Atlassian partners for complex Jira migrations (involving apps and scripts)

Atlassian has set a fixed end-of-life timeline for Data Center. New sales end March 30, 2026. License and app expansions end March 30, 2028. Full support ends March 28, 2029, after which instances move to read-only mode . For enterprise IT leaders, it means a big shift.

This guide evaluates six Atlassian Solution Partners for complex Jira migrations (with Marketplace apps, custom scripts, and large user bases). The focus is not on script refactoring, app consolidation, governance, and long-term total cost control.

Our scoring model applies five criteria:

  • Migration and modernization execution 
  • App ecosystem and script refactoring expertise
  • Enterprise scale and governance 
  • Security and compliance readiness
  • Ongoing managed services and TCO optimization

Each partner is checked against each criterion strictly based on public evidence and Partner Directory data.

Key takeaways

  • The Atlassian Data Center end-of-life creates a hard migration deadline
    Atlassian will stop new Data Center sales in March 2026 and end support completely in March 2029. This means organizations running Jira Data Center must start planning their move to Cloud soon. Waiting too long increases migration risks, limits partner availability, and can drive up costs.
  • Complex Jira migrations are mostly about apps and scripts, not data
    Moving projects and users is relatively straightforward. The real challenge lies in custom scripts, Marketplace apps, and integrations. Many Data Center automations rely on Groovy scripts and internal APIs that do not work in Cloud and must be rewritten using REST APIs or Jira Expressions.
  • Marketplace apps require careful evaluation before migration
    The Jira Cloud Migration Assistant moves core data but does not automatically migrate every app or its configuration. Organizations should audit each app and decide whether to migrate it, replace it with native Cloud functionality, or retire it. This process can reduce app sprawl and cut licensing costs by up to 25 percent.
  • Large organizations should avoid “lift-and-shift” migrations
    For environments with large datasets or thousands of users, a phased migration is usually safer than a single cutover. Migrating teams or projects step by step reduces downtime risk and allows better testing and governance during the transition.
  • An experienced Atlassian migration partner reduces risk significantly
    Complex migrations require skills in script refactoring, app consolidation, and governance planning. A partner such as Deviniti combines Atlassian consulting, Cloud migration planning, app expertise, and post-migration support, helping enterprises move to Jira Cloud with minimal downtime and long-term cost control. 

“For organizations with more than 1,000 users, our new complimentary Atlassian FastShift Program offers a strategic partnership, dramatically accelerating timelines (from 12–16 months to just 2–6 months).”
~ Atlassian

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Evaluation framework and selection criteria

To keep this analysis neutral and transparent scoring model. Each partner is evaluated against criteria that reflect real migration challenges. This makes the evaluation transparent, repeatable, and defensible. The goal is simple: identify partners that can manage complexity at scale – not just complete a basic Cloud move.

Inclusion and exclusion criteria

To be included in this report, vendors must meet clearly defined qualification thresholds.

First, each candidate must hold active Atlassian Platinum Solution Partner status. This is the highest level of partnership awarded by Atlassian and confirms verified delivery capability, certified expertise, and long-term commercial commitment. In addition, vendors must possess the official Atlassian Cloud Specialization badge, which requires formal validation of successful enterprise Cloud migrations.

Transparency disclosure and operational limits

This analysis is based strictly on publicly available sources, including vendor documentation, official service pages, the Atlassian Partner Directory, and verified third-party reviews accessible as of March 2026.

Because elements such as pricing structures, employee counts, certification renewals, award statuses, and SLA offerings change over time, all claims should be treated as point-in-time references. Enterprise buyers should independently confirm current credentials, support models, compliance certifications, and licensing structures directly through the Atlassian Partner Directory and formal vendor scoping discussions before signing any Statement of Work.

The goal of this report is to provide a structured, evidence-based comparison (not to replace due diligence).

Comparison snapshot

VendorBest forKey strengths & featuresNotable certifications/AwardsWho shouldn’t use It
DevinitiEnterprises needing bundled ITSM solutions, native app insight, and intricate script refactoring.Double Platinum status (Solution/Marketplace); proprietary migration validation scripts; extensive app development DNA.Platinum Partner; Cloud Specialization; ITSM Specialization; 24-25 Emerging Markets Finalist.
ISO 27001; SOC 2 Type II; GDPR
Organizations seeking a purely neutral advisor with no proprietary apps.
AdaptavistHighly customized instances relying heavily on ScriptRunner and deep technical automation.Creators of ScriptRunner; specialized ScriptRunner Migration Suite (SMS); 24/7 global operations.Platinum Partner; Cloud Specialization; ISO 27001; SOC 2 Type II; 24-25 Services AMER Winner.Smaller teams requiring simple, out-of-the-box lift-and-shift migrations.
CprimeMassive global rollouts and enterprise-wide Agile (SAFe) transformation programs.Handled largest historical migration (PayPal – 35k users); expert in Jira Expressions; FastShift delivery.Platinum Partner; Cloud Specialization; Agile at Scale; 24-25 Cloud Transformation Services Winner.Companies solely looking for basic IT support without process transformation.
ValiantysRegulated global entities requiring procurement-friendly SLAs and strict governance.Neutral app stance; highly secure private cloud options; robust managed services.Platinum Partner; Cloud Specialization; ISO 9001; ISO 27001; HIPAA; 24-25 Cloud Platform Solutions Winner.Mid-market teams looking for highly bespoke, custom-coded app development.
EficodeEuropean enterprises integrating Atlassian into complex, broader DevOps toolchains.DevOps-first methodology; CI/CD integration (GitLab/GitHub); script-to-native-automation conversion.Platinum Partner; Cloud Specialization; ITSM Specialization; 24-25 World Class Software Dev Winner.Organizations operating primarily outside the EMEA region.
Isos TechnologyUS Public Sector, EDU, and healthcare clients demanding strict compliance frameworks.FedRAMP/HIPAA alignment; strong US-based delivery; Atlassian License Management expertise.Platinum Partner; Cloud Specialization; ITSM Specialization.Enterprises requiring primary delivery centers in APAC or CEE regions.

This snapshot isolates the core differentiators that matter in complex Jira migrations involving Marketplace apps and custom scripts. All listed vendors meet the minimum inclusion threshold of Platinum Solution Partner and Cloud Specialization as defined in the evaluation framework .

Ranked list of top Atlassian migration partners for complex Jira migrations (involving apps and scripts)

The following profiles apply the weighted framework to each shortlisted partner. As mentioned, it is based on verifiable public evidence of migration execution, script refactoring, enterprise-scale, compliance posture, and post-migration governance.

Deviniti

Deviniti holds Platinum status as both Atlassian Solution Partner and Atlassian Marketplace Partner. This dual competency directly impacts complex migrations involving proprietary apps, custom scripts, and API level constraints.

The company helps companies get the most out of Jira and Jira Service Management. Deviniti provides complete support across the Atlassian stack – from initial setup, consulting, license management, configuration, cloud migrations, and post-launch support. Atlassian named Deviniti a finalist for Partner of the Year 2024–2025 of Emerging Markets, highlighting its “exceptional innovation” and impact for customers.

Deviniti develops and maintains Marketplace applications used by more than 11 million users. That product engineering background strengthens its ability to refactor Groovy-based automations into Cloud-compliant REST-driven logic. The firm also uses proprietary migration validation scripts to verify issue integrity, field mapping, and configuration consistency during transit.

Key capabilities

  • Script inventory, mapping, and REST-based refactoring
  • App by app migration and consolidation assessment
  • Bundled license management and migration delivery model
  • ISO 27001:2022 and SOC 2 alignment

Looking for a partner experienced in complex Jira migrations?

Deviniti supports the entire Atlassian lifecycle – consulting, Cloud migration, licensing, implementation, and managed services.
See the full scope of Atlassian services:

“From the perspective of a Jira Administrator, especially during the weekend implementation phase, working with Deviniti proved to be significant facilitation. In short, where technical difficulties arose, they provided the necessary knowledge and expertise. As a result, many encountered problems were resolved much more efficiently, leading to the successful launch of the applications.”
~ Adrian Kraska, Jira Administrator, Credit Agricole Bank Polska

Best for

Enterprises with significant ITSM usage, heavy Marketplace app dependency, and complex custom scripting, particularly in regulated EMEA contexts.

Adaptavist

As the creator of ScriptRunner, Adaptavist offers the ScriptRunner Migration Suite, including analysis tooling and automated conversion components. For environments deeply dependent on Groovy scripts, this native product knowledge reduces translation risk.

Key capabilities

“Atlassian announced today that Adaptavist has been named a winner of the 2024 Atlassian Solution Partner of the Year in the Services Americas award category. This award honours Adaptavist’s exceptional contributions to Atlassian customers throughout 2024, showcasing its innovation, expertise, and dedication to delivering transformative solutions.”
The Adaptavist Group

Best for

Global enterprises with heavy ScriptRunner reliance and continuous automation requirements .

Cprime

Cprime migrated over 35,000 users for PayPal. This scale demonstrates enterprise program management capability and phased execution discipline. The firm also applies its Jira Expressions expertise when translating legacy custom logic.

Key capabilities

  • FastShift enabled acceleration programs
  • Enterprise Agile transformation alignment
  • AI-assisted migration assessment

“Cprime brings business into a new light. As Atlassian’s largest and longest-standing Solution Partner, we’ve led some of the most complex transformations to date – including the largest Atlassian Cloud migration in history for PayPal. For more than two decades, Cprime has helped enterprises modernize on Atlassian Cloud, unify data, and connect teams into intelligent flow.”
Atlassian Marketplace vendor profile

Best for

Large multinational enterprises aligning Cloud migration with SAFe or enterprise transformation initiatives.

Valiantys maintains an explicitly neutral position on proprietary Marketplace apps. For procurement teams prioritizing independence in app consolidation decisions, this neutrality can simplify governance review.

Key capabilities

  • ISO 9001 and ISO 27001 certifications
  • HIPAA alignment
  • Structured Cloud Transformation Assessments

“For years, we’ve helped enterprises use Atlassian tools to drive successful transformation initiatives. As the pace of innovation quickens, we’re transforming how we bring solutions to our customers. Deepening our consulting practices, driving our vertical industry expertise and doubling down on efficiency allows us to help teams around the world unlock agility and get the most from their AI investments.”
Emmanuel Benoit, Global CEO, Valiantys

Best for

Global regulated enterprises requiring formal SLAs, audit readiness, and structured governance frameworks.

Eficode

Eficode approaches Atlassian Cloud migration primarily from a DevOps transformation perspective. Rather than focusing only on Jira configuration, the company typically positions migrations as part of a broader modernization of development toolchains, integrating Atlassian platforms with systems such as GitHub, GitLab, and CI/CD pipelines.

Key capabilities

  • DevOps toolchain integration
  • Native automation conversion
  • ITSM Specialization

“Everything was extremely smooth, which is rare for an IT project of this scale. Thanks to Eficode’s expertise and strategic planning, we managed to complete the migration with zero downtime for our 400 customers.”
Des Currivan, European Support Director, Element Logic

Best for

European enterprises embedding Jira Cloud within broader CI and CD modernization programs.

Isos Technology

Isos aligns Cloud migrations with FedRAMP and HIPAA requirements. It also provides structured Atlassian license management support to navigate public procurement constraints.

Key capabilities

  • ITSM transformation focus
  • Public sector compliance orientation
  • US-based delivery model

“Isos Technology was able to take the subjectiveness of priority out of our typical help desk issues. They helped us define specific requirements to determine impact and urgency for rules handling. As a result, they were able to automate our queues to determine priority, providing consistency for every triaged issue.”
Amy K. Vice President of Information Security & Compliance, OC Tanner

Best for

US government, education, and healthcare organizations requiring strict regulatory alignment.


Across all six vendors, the primary separation factor is script and app complexity handling. Deviniti and Adaptavist demonstrate the deepest product-level involvement with Marketplace apps and automation frameworks. For migrations where refactoring risk outweighs infrastructure risk, that engineering depth materially influences delivery certainty.

“Over the past year, they have played a pivotal role in guiding organizations through cloud migrations, driving enterprise transformation, and expanding Atlassian solutions to power teamwork at scale. Their dedication to delivering world-class services and solutions has not only elevated theAtlassian ecosystem but also helped customers unlock new levels of efficiency and collaboration.”
~ Atlassian 

Buyer’s guide on how to navigate complex Atlassian Cloud migrations

Migrating from Atlassian Data Center to Cloud is more than just a data copy. The primary risk sits in technical debt, meaning custom scripts, app sprawl, and brittle integrations. Buyers should evaluate partners on how they refactor automation, reduce app exposure, and control cutover risk, not on project volume alone.

1. The technical reality of script refactoring

Data Center scripts commonly run Groovy inside Jira with direct access to internal Java APIs and the database model. Cloud blocks that model and pushes automation to REST APIs and Jira Expressions.

Cloud environments impose strict, non-negotiable execution parameters:

  • Execution timeouts: Cloud scripts are strictly capped at 240 seconds per execution. Heavy, long-running Data Center scripts that iterate over massive datasets will fail. They must be architecturally refactored into smaller, asynchronous operations or triggered as Scheduled Jobs.
  • API rate limiting dynamics: Effective March 2, 2026, Atlassian is enforcing a new, highly restrictive points-based API rate limit across all Jira and Confluence REST APIs. If a script exceeds these limits, it will receive HTTP 429 “Too Many Requests” responses, resulting in a RuntimeException that silently breaks workflows.

What to demand from vendors: ask for a sanitized runbook that shows how they map Groovy logic to Cloud automation, webhooks, REST calls, or Jira Expressions, including pagination and backoff behavior based on Retry After headers.

Does your Jira environment rely on Marketplace apps or Groovy scripts?

A migration assessment can help estimate complexity and refactoring effort before the project begins.
Learn how we support enterprise Atlassian migrations

2. App assessment and vendor consolidation

Jira Cloud Migration Assistant moves core Jira data, users, and groups. It does not automatically migrate every third-party app configuration or data, and it does not refactor incompatible scripts. Migrated scripts can arrive commented out and inert.

A partner should produce an app decision table for every Marketplace app:

  1. Automated migration using a vendor-supported path
  2. Replace with native Cloud features
  3. Retire and remove

The dataset notes that effective auditing can reduce app waste by up to 25 percent, thereby reducing licensing spend and shrinking the attack surface.

3. Phased migrations vs. lift and shift methodologies

For environments with more than 10,000 users or very large data volumes, a big-bang cutover increases downtime and corruption risk. Phased migration moves business units or project groups in sequence, which keeps operations running and contains user acceptance testing to smaller cohorts.

If a vendor proposes a single cutover, require a rollback plan, a verification plan, and a quantified downtime window. If a vendor proposes phases, require governance for parallel operations and clear exit criteria per phase.

4. TCO and proven financial ROI

According to a commissioned Forrester Total Economic Impact (TEI) study, organizations that successfully transition to Atlassian Cloud achieve a 155% Return on Investment (ROI) over a three-year period.This phenomenal ROI is driven by accelerating Agile development cycles, maximizing cloud productivity, and completely avoiding the exorbitant hardware and maintenance costs associated with legacy infrastructure. Furthermore, companies report reducing administrative overhead by up to 88% and achieving an average overall IT savings of 20%. 

What to demand from vendors: a financial forecast during assessment that links savings to specific actions, such as app retirement, permission simplification, and governance changes, plus a stabilization plan that prevents cost drift after go-live.

Conclusion

Atlassian Data Center retirement is now a fixed milestone. For enterprises running complex Jira environments, the risk rarely sits in the core data. The risk sits in custom scripts, Marketplace apps, and undocumented automation. These elements break first during Cloud transitions. The partner you select determines whether those dependencies are rebuilt cleanly or become long-term operational friction.

Atlassian Partners for complex Jira migrations FAQ

  • What is the definitive timeline for the Atlassian Data Center End-of-Life (EOL)?

    The timeline is immediate and phased. Atlassian halts new sales for new Data Center customers on March 30, 2026. This is followed by the end of app and license expansion purchases on March 30, 2028. Finally, Atlassian will officially end all Data Center support on March 28, 2029, at which point instances become read-only. Waiting until the final 2029 deadline to begin planning drastically increases transition risks, limits partner availability, and escalates costs.

  • Can we simply “lift-and-shift” our existing Groovy scripts from Data Center to Atlassian Cloud?

    No. This is a critical misconception. Atlassian Data Center scripts utilize Groovy with direct, internal Java API access, an architecture that is entirely incompatible with Atlassian Cloud. All custom logic must be meticulously refactored to utilize REST APIs, Jira Expressions, or native Atlassian Cloud Automation. Furthermore, Cloud scripts face a hard 240-second execution timeout, requiring large operations to be broken down into asynchronous tasks. This refactoring requires a partner with dedicated, high-level software engineering expertise.

  • Is Jira Cloud Migration Assistant sufficient for migration with apps and scripts?

    Jira Cloud Migration Assistant is Atlassian’s recommended tool for core Jira data migration. It moves projects, users, and groups efficiently.
    However, application configurations and custom scripts often require separate handling. Many Marketplace apps depend on vendor-specific migration paths. Scripts may arrive commented out and require manual refactoring to function in Cloud.
    For complex environments, JCMA is necessary but not sufficient.

  • How should ScriptRunner be handled when migrating to Cloud?

    In the Data Center, ScriptRunner uses Groovy with direct Java API access. Cloud requires REST APIs and Jira Expressions instead.
    Scripts frequently require manual rewriting. Execution timeouts and API rate limits introduce additional architectural constraints.
    Procurement teams should request a documented rewrite plan, regression testing scope, and a validation approach for rate-limiting behavior.

  • What if an app has no Cloud version or no migration path?

    Atlassian recommends conducting an early app assessment to identify migration paths. If no automated path exists, the vendor should contact the Marketplace Partner directly.

    The migration partner should then recommend one of three actions: replace, rebuild, or retire. The decision must consider security exposure, functional dependency, and cost.

  • How do you verify a partner’s Cloud Specialization and status?

    Cloud Specialized partners have passed Atlassian’s verification requirements for complex Cloud migrations. These include assessment capability, custom app handling, end-to-end migration delivery, and governance alignment.

    Buyers should verify status directly in the Atlassian Partner Directory at the time of procurement, as credentials can change.

  • What minimum evidence should you request before signing?

    At a minimum, request:

    • A Partner Directory profile link
    • One to two case studies with comparable app or script complexity
    • A sandbox testing plan
    • A cutover and rollback plan
    • A stabilization and post migration governance model

    Atlassian documents the value of sandbox environments for pre-production validation. In high-risk migrations, evidence reduces uncertainty. Documentation demonstrates delivery maturity.

Justyna Gdowik

Justyna is a Content Specialist at Deviniti, where she combines her expertise in SEO optimization with a passion for captivating writing. Her aim is to convert complex technical concepts into reader-friendly language, ensuring accessibility for a diverse readership. Privately, she seeks out new adventures and culinary experiences, continuously feeding her curiosity and enriching her perspective.

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